Translational Biophotonics Laboratory

Publication (Google Scholar Link)

2024

Won J., Takahashi H., Ploner S., Karbole W., Abu-Qamar O., Yaghy A., Marmalidou A., Kaiser S., Hwang Y., Lin J., Witkin A., Desai S., Baumal C.R., Maier A., Curcio C., Waheed N., and Fujimoto J.G., “Topographic measurement of the sub-retinal pigment epithelium space in normal aging and age-related macular degeneration using high-resolution OCT”, Investigative Ophthalmology & Visual Science, 65(10), 18 (2024). [link]

Hwang Y., Takahashi H., Won J., Yaghy A., Marmalidou A., Kaiser S., Jamil M.U., Baumal C.R., Waheed N., and Fujimoto J.G., “Quantification of capillary blood flow speeds in diabetic retinopathy using variable interscan time analysis (VISTA) OCTA”, in press, Retina (2024). [link]

2023

Hwang Y., Won J., Yaghy A., Takahashi H., Girgis J.M., Lam K., Chen S., Moult E.M., Ploner S.B., Waheed N.K., and Fujimoto J.G., “Retinal blood flow speed quantification at the capillary level using temporal autocorrelation fitting [Invited]”, 30 Years of Optical Coherence Tomography feature issue of Biomedical Optics Express, 14(6), 2658-2677 (2023). Editor’s Pick. [link]

Ploner S., Won J., Schottenhamml J., Girgis J, Lam K, Waheed N, Fujimoto J.G., and Maier A., A spatiotemporal illumination model for 3D image fusion in optical coherence tomography, IEEE International Symposium on Biomedical Imaging (ISBI) pp. 1-5, (2023). [link]

Zhang C., Zaki F., Won J., and Boppart S.A., “A multimodal nonlinear optical microscopy study of the responses of Pseudomonas aeruginosa to blue light and antibiotic treatment”, Journal of Biophotonics, e202300384 (2023). [link]

Huang C., Ginn T., Clark G., Zaki F., Won J., Boppart S.A., and Nguyen H., “Phosphate-based corrosion inhibition in drinking water systems and effects on disinfectant decay and biofilm growth”, Environmental Engineering Science, 40(11), 634-644 (2023). [link]

Won J., Monroy G.L., Khampang P., Barkalifa R., Hong W., Chaney E., Aksamitiene E., Porter R.G., Novak M.A., Spillman D.R., Kerschner J.E., and Boppart S.A., “In vivo optical characterization of middle ear effusions and biofilms during otitis media”, Journal of the Association for Research in Otolaryngology, 24, 325-337 (2023). [link]

Huang C., Clark G., Zaki F., Won J., Ning R., Boppart S.A., Elbanna A.E., and Nguyen T.H., “Effects of phosphate and silicate on stiffness and viscoelasticity of mature biofilms developed with simulated drinking water”, Biofouling, 39(1), 36-46 (2023). [link]

2022

Ploner S., Chen S., Won J., Husvogt L., Breininger K., Schottenhamml J., Fujimoto J.G., and Maier A., A spatiotemporal model for precise and efficient fully-automatic 3D motion correction in OCT, The Medical Image Computing and Computer Assisted Intervention Society (MICCAI) (2022), Part II, 517-527. [link]

Locke A.*, Zaki F.R.*, Fitzgerald S., Sudhir K., Monroy G.L., Choi H., Won J., Mahadevan-Jansen A., and Boppart S.A., “Differentiation of otitis media-causing bacteria and biofilms via Raman spectroscopy and optical coherence tomography”, Frontiers in Cellular and Infection Microbiology, 12, 869761 (2022). [link]

Monroy G.L.*, Fitzgerald S.T.*, Locke A., Won J., Spillman D.R., Ho A., Zaki F., Choi H., Chaney E.J., Werkhaven J.A., Mason K., Mahadevan-Jansen A., and Boppart S.A., “Multimodal handheld probe for characterizing otitis media – integrating Raman spectroscopy and optical coherence tomography”, Frontiers in Photonics, 3, 929574 (2022). [link]

Monroy G.L., Won J., Shi J., Spillman D.R., and Boppart S.A., “Automated classification of otitis media with OCT: Augmenting pediatric image dataset with gold-standard animal model data”, Biomedical Optics Express, 13(6), 3601-3614 (2022). [link]

Deng Y-H., Ricciardulli T., Won J., Boppart S.A., Flaherty D.W., Kong H., “Self-locomotive, antimicrobial microrobot (SLAM) swarm for enhanced biofilm elimination”, Biomaterials, 287, 121610 (2022). [link]

Choi H., Zaki F., Monroy G.L., Won J., and Boppart S.A., “Imaging and characterization of transitions in biofilm morphology via anomalous diffusion following environmental perturbation”, Biomedical Optics Express, 13(3), 1654-1670 (2022). [link]

2021

Sun P.P.*, Won J.*, Choo-Kang G.*, Li S., Chen W., Monroy G.L., Chaney E., Boppart S.A., Eden J.G., and Nguyen T.H., “Inactivation and sensitization of Pseudomonas aeruginosa by microplasma jet array for treating otitis media”, npj Biofilms and Microbiomes, 7(48), 1 (2021). [link]

Won J., Monroy G.L., Dsouza R.I., Spillman D.R., McJunkin J., Porter R.G., Shi J., Aksamitiene E., Sherwood M., Stiger L., and Boppart S.A., “Handheld briefcase optical coherence tomography with real-time machine learning classifier for diagnosing middle ear infections [Invited]”, Biosensors, 11(5), 143(2021). NIH/NIBIB Science Highlight. [link]

Won J.*, Hong W.*, Khampang P., Spillman D.R., Marshall S., Yan K., Porter R.G., Novak M.A., Kerschner J.E., and Boppart S.A., “Longitudinal optical coherence tomography of the antibiotic treatment response in otitis media”, Scientific Reports, 11, 5176 (2021). [link]

2020

Won J.*, Huang P-C.*, Spillman D.R., Chaney E., Adam R., Klukowska M., Barkalifa R., and Boppart S.A., “Handheld optical coherence tomography for clinical assessment of dental plaque and gingiva”, Journal of Biomedical Optics, 25(11), 116011 (2020). [link]

Huang C., Sun P.P., Won J., Wang Y., Boppart S.A., and Nguyen T.H., “Effect of non-phosphorus corrosion inhibitors on biofilm pore structure and mechanical properties”, Environmental Science & Technology, 54(22), 14716-14724 (2020). [link]

Won J., Porter R.G., Novak M.A., Youakim J., Sum A., Barkalifa R., Aksamitiene E., Zhang A., Nolan R., Shelton R., and Boppart S.A., “In vivo dynamic characterization of the human tympanic membrane using pneumatic optical coherence tomography”, Journal of Biophotonics, 13(11), e202070033 (2020). Featured on cover page. [link]

Won J., Huang P-C., and Boppart S.A. “Phase-based Eulerian motion magnification reveals eardrum mobility from pneumatic otoscopy without sealing of the ear canal [Invited]”, Journal of Physics: Photonics, 2, 034004 (2020). [link]

Won J., Monroy G.L., Huang P-C., Hill M.C., Novak M.A., Porter R.G., Spillman D.R., Chaney E., Barkalifa R., and Boppart S.A. “Assessing effect of middle ear effusions on wideband acoustic immittance using optical coherence tomography”, Ear and Hearing, 41(4), 811-824 (2020). [link]

2019

Monroy G.L., Won J., Dsouza R.I., Pande P., Hill M.C., Porter R.G., Novak M.A., Spillman D.R., and Boppart S.A. “Automated classification platform for the identification of otitis media using optical coherence tomography”, npj Digital Medicine, 2(22), 1-11 (2019). [link]

2018

Dsouza R.I., Won J., Monroy G.L., Spillman D.R., and Boppart S.A. “Economical and compact briefcase spectral domain optical coherence tomography system for primary care and point-of-care applications”, Journal of Biomedical Optics, 23(9), 096003 (2018). [link]

Dsouza R.I., Won J., Monroy G.L., Hill M.C., Porter R.G., Novak M.A., and Boppart S.A. “In vivo detection of nanometer-scale structural changes of the human tympanic membrane using nano-sensitive optical coherence tomography”, Scientific Reports, 8, 8777 (2018). [link]

Won J., Monroy G.L., Huang P-C., Dsouza R.I., Hill M.C., Novak M.A., Porter R.G., Chaney E., Barkalifa R., and Boppart S.A. “Pneumatic low-coherence interferometry otoscope to quantify tympanic membrane mobility and middle ear pressure”, Biomedical Optics Express, 9(2), 397-409 (2018). Editor’s Pick. [link]

2017

Monroy G.L., Won J., Spillman D.R., Dsouza R.I., and Boppart S.A. “Clinical translation of handheld optical coherence tomography: Practical considerations and recent advancements”, Journal of Biomedical Optics, 22(12), 121715 (2017). [link]

2016

Tankam P.*, Won J.*, Canavesi C., Cox I. and Rolland J.P. “Assessing the edge-thickness of soft contact lenses using Gabor-domain optical coherence microscopy”, Optometry and Vision Science, 93(8), 987-996 (2016). [link]

2015

Duma V.F., Tankam P., Huang J., Won J. and Rolland J.P. “Optimization of galvanometer scanning for optical coherence tomography”, Applied Optics, 54(17), 5495-5507 (2015). [link]

Tankam P., He Z., Chu Y.J., Won J., Canavesi C., Lepine T., Hindman H., Topham D., Gain P., Thuret G. and Rolland J.P. “Assessing microstructures of the cornea with Gabor-domain optical coherence microscopy: pathway for corneal physiology and diseases”, Optics Letters, 40(6), 1113-1116 (2015). [link]

2014

Tankam P., Santhanam A.P., Lee K.S., Won J., Canavesi C. and Rolland J.P. “Parallelized multi-graphics processing unit framework for high-speed Gabor-domain optical coherence microscopy”, Journal of Biomedical Optics, 19(7), 071410 (2014). [link]