{"id":1307,"date":"2023-11-04T14:32:14","date_gmt":"2023-11-04T14:32:14","guid":{"rendered":"https:\/\/wpdev.acsu.buffalo.edu\/energy\/?page_id=55"},"modified":"2025-06-16T14:10:51","modified_gmt":"2025-06-16T14:10:51","slug":"publication","status":"publish","type":"page","link":"https:\/\/ubwp.buffalo.edu\/biophotonics\/publication\/","title":{"rendered":"Publication"},"content":{"rendered":"\t\t
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Publication<\/span> (<\/span>Google Scholar Link<\/a>)<\/b><\/p>

2025<\/span><\/strong><\/p>

Won J.*,<\/strong> Yaghy A.*, Ploner S., Kaiser S., Hwang Y., Maier A., Waheed N.K., and Fujimoto J.G., \u201cHigh-resolution, motion corrected, volume fused optical coherence tomography reveals longitudinal changes in subretinal drusenoid deposits in intermediate dry age-related macular degeneration\u201d,\u00a0Translational Vision Science & Technology, <\/em>14<\/strong>(6), 15 <\/em>(2025). [link]<\/a><\/p>

Takahashi H., Hwang Y., Won J.,<\/strong> Jamil M.U., Yaghy A., Liang M., Baumal C.R., Witkin A.J., Ohno-Matsui K., Duker J.S., Fujimoto J.G., and Waheed N.K., \u201cBlood flow speed of retinal microaneurysms in eyes with diabetic retinopathy quantified by high-speed OCTA using variable interscan time analysis\u201d,\u00a0Translational Vision Science & Technology, <\/em>14<\/strong>(2), 27 (2025). [link]<\/a><\/p>

Hwang Y., Takahashi H., Won J.,<\/strong> Yaghy A., Marmalidou A., Kaiser S., Jamil M.U., Baumal C.R., Waheed N., and Fujimoto J.G., \u201cQuantification of capillary blood flow speeds in diabetic retinopathy using variable interscan time analysis (VISTA) OCTA\u201d, Retina<\/em>, 45<\/strong>(1), 35-43 (2025). [link]<\/a><\/p>

Jamil U.M.*, Won J.*<\/strong>, Marmalidou A., Ploner S., Takahashi H., Kaiser S., Hwang Y., Abu-Qamar O., Yaghy A., Witkin A.J., Zhao P.Y., Desai S., Duker J.S., Maier A., Fujimoto J.G., and Waheed N., “High-resolution OCT reveals age-associated variation in the region posterior to ELM”, Translational Vision Science & Technology<\/em>, 14<\/strong>(1), 16 (2025). [link]<\/a><\/p>

2024<\/h3>

Won J., <\/strong>Takahashi H., Ploner S., Karbole W., Abu-Qamar O., Yaghy A., Marmalidou A., Kaiser S., Hwang Y., Lin J., Witkin A., Desai S., Baumal C.R., Maier A., Curcio C., Waheed N., and Fujimoto J.G., \u201cTopographic measurement of the sub-retinal pigment epithelium space in normal aging and age-related macular degeneration using high-resolution OCT\u201d, Investigative Ophthalmology & Visual Science, <\/em>65<\/strong>(10), 18 (2024). [link]<\/a><\/p>

2023<\/h3>

Hwang Y., Won J.,<\/strong> Yaghy A., Takahashi H., Girgis J.M., Lam K., Chen S., Moult E.M., Ploner S.B., Waheed N.K., and Fujimoto J.G., \u201cRetinal blood flow speed quantification at the capillary level using temporal autocorrelation fitting [Invited]\u201d, 30 Years of Optical Coherence Tomography feature issue of Biomedical Optics Express, <\/em>14<\/strong>(6), 2658-2677 (2023). Editor\u2019s Pick. <\/strong> [link]<\/a><\/p>

Ploner S., Won J.,<\/strong> Schottenhamml J., Girgis J, Lam K, Waheed N, Fujimoto J.G., and Maier A., A spatiotemporal illumination model for 3D image fusion in optical coherence tomography, IEEE International Symposium on Biomedical Imaging (ISBI) pp. 1-5, <\/em>(2023). [link]<\/a><\/p>

Zhang C., Zaki F., Won J.,<\/strong> and Boppart S.A., \u201cA multimodal nonlinear optical microscopy study of the responses of Pseudomonas aeruginosa<\/em> to blue light and antibiotic treatment\u201d, Journal of Biophotonics<\/em>, e202300384 (2023). [link]<\/a><\/p>

Huang C., Ginn T., Clark G., Zaki F., Won J.,<\/strong> Boppart S.A., and Nguyen H., \u201cPhosphate-based corrosion inhibition in drinking water systems and effects on disinfectant decay and biofilm growth\u201d, Environmental Engineering Science, <\/em>40<\/strong>(11), 634-644 (2023). [link]<\/a><\/p>

Won J.,<\/strong> Monroy G.L., Khampang P., Barkalifa R., Hong W., Chaney E., Aksamitiene E., Porter R.G., Novak M.A., Spillman D.R., Kerschner J.E., and Boppart S.A., \u201cIn vivo <\/em>optical characterization of middle ear effusions and biofilms during otitis media\u201d, Journal of the Association for Research in Otolaryngology, <\/em>24<\/strong>, 325-337 (2023). [link]<\/a><\/p>

Huang C., Clark G., Zaki F., Won J., <\/strong>Ning R., Boppart S.A., Elbanna A.E., and Nguyen T.H., \u201cEffects of phosphate and silicate on stiffness and viscoelasticity of mature biofilms developed with simulated drinking water\u201d, Biofouling, <\/em>39<\/strong>(1), 36-46 (2023). [link]<\/a><\/p>

2022<\/h3>

Ploner S., Chen S., Won J.,<\/strong> Husvogt L., Breininger K., Schottenhamml J., Fujimoto J.G., and Maier A., A spatiotemporal model for precise and efficient fully-automatic 3D motion correction in OCT, The Medical Image Computing and Computer Assisted Intervention Society (MICCAI) <\/em>(2022), Part II, 517-527. [link]<\/a><\/p>

Locke A.*, Zaki F.R.*, Fitzgerald S., Sudhir K., Monroy G.L., Choi H., Won J.,<\/strong> Mahadevan-Jansen A., and Boppart S.A., \u201cDifferentiation of otitis media-causing bacteria and biofilms via Raman spectroscopy and optical coherence tomography\u201d, Frontiers in Cellular and Infection Microbiology, <\/em>12<\/strong>, 869761 (2022). [link]<\/a><\/p>

Monroy G.L.*, Fitzgerald S.T.*, Locke A., Won J.,<\/strong> Spillman D.R., Ho A., Zaki F., Choi H., Chaney E.J., Werkhaven J.A., Mason K., Mahadevan-Jansen A., and Boppart S.A., \u201cMultimodal handheld probe for characterizing otitis media \u2013 integrating Raman spectroscopy and optical coherence tomography\u201d, Frontiers in Photonics<\/em>, 3<\/strong>, 929574 (2022). [link]<\/a><\/p>

Monroy G.L., Won J.<\/strong>, Shi J., Spillman D.R., and Boppart S.A., \u201cAutomated classification of otitis media with OCT: Augmenting pediatric image dataset with gold-standard animal model data\u201d, Biomedical Optics Express, <\/em>13<\/strong>(6), 3601-3614 (2022). [link]<\/a><\/p>

Deng Y-H., Ricciardulli T., Won J., <\/strong>Boppart S.A., Flaherty D.W., Kong H., \u201cSelf-locomotive, antimicrobial microrobot (SLAM) swarm for enhanced biofilm elimination\u201d, Biomaterials, <\/em>287<\/strong>, 121610 (2022). [link]<\/a><\/p>

Choi H., Zaki F., Monroy G.L., Won J.,<\/strong> and Boppart S.A., \u201cImaging and characterization of transitions in biofilm morphology via anomalous diffusion following environmental perturbation\u201d, Biomedical Optics Express<\/em>, 13<\/strong>(3), 1654-1670 (2022). [link]<\/a><\/p>

2021<\/h3>

Sun P.P.*, Won J.*,<\/strong> Choo-Kang G.*, Li S., Chen W., Monroy G.L., Chaney E., Boppart S.A., Eden J.G., and Nguyen T.H., \u201cInactivation and sensitization of Pseudomonas aeruginosa <\/em>by microplasma jet array for treating otitis media\u201d, npj Biofilms and Microbiomes, <\/em>7<\/strong>(48), 1 (2021).\u00a0<\/strong>[link]<\/a><\/p>

Won J.,<\/strong> Monroy G.L., Dsouza R.I., Spillman D.R., McJunkin J., Porter R.G., Shi J., Aksamitiene E., Sherwood M., Stiger L., and Boppart S.A., \u201cHandheld briefcase optical coherence tomography with real-time machine learning classifier for diagnosing middle ear infections [Invited]\u201d, Biosensors, <\/em>11<\/strong>(5), 143(2021). NIH\/<\/strong>NIBIB Science Highlight.<\/strong> [link]<\/a><\/p>

Won J.*,<\/strong> Hong W.*, Khampang P., Spillman D.R., Marshall S., Yan K., Porter R.G., Novak M.A., Kerschner J.E., and Boppart S.A., \u201cLongitudinal optical coherence tomography of the antibiotic treatment response in otitis media\u201d, Scientific Reports, <\/em>11, <\/strong>5176 (2021). [link]<\/a><\/p>

2020<\/h3>

Won J.*,<\/strong> Huang P-C.*, Spillman D.R., Chaney E., Adam R., Klukowska M., Barkalifa R., and Boppart S.A., \u201cHandheld optical coherence tomography for clinical assessment of dental plaque and gingiva\u201d, Journal of Biomedical Optics<\/em>, 25<\/strong>(11), 116011 (2020). [link]<\/a><\/p>

Huang C., Sun P.P., Won J.,<\/strong> Wang Y., Boppart S.A., and Nguyen T.H., \u201cEffect of non-phosphorus corrosion inhibitors on biofilm pore structure and mechanical properties\u201d, Environmental Science & Technology<\/em>, 54<\/strong>(22), 14716-14724 (2020). [link]<\/a><\/p>

Won J.,<\/strong> Porter R.G., Novak M.A., Youakim J., Sum A., Barkalifa R., Aksamitiene E., Zhang A., Nolan R., Shelton R., and Boppart S.A., \u201cIn vivo<\/em> dynamic characterization of the human tympanic membrane using pneumatic optical coherence tomography\u201d, Journal of Biophotonics<\/em>, 13<\/strong>(11), e202070033 (2020). Featured on cover page<\/strong>. [link]<\/a><\/p>

Won J.,<\/strong> Huang P-C., and Boppart S.A. \u201cPhase-based Eulerian motion magnification reveals eardrum mobility from pneumatic otoscopy without sealing of the ear canal [Invited]\u201d, Journal of Physics: Photonics<\/em>, 2<\/strong>, 034004 (2020). [link]<\/a><\/p>

Won J.,<\/strong> Monroy G.L., Huang P-C., Hill M.C., Novak M.A., Porter R.G., Spillman D.R., Chaney E., Barkalifa R., and Boppart S.A. \u201cAssessing effect of middle ear effusions on wideband acoustic immittance using optical coherence tomography\u201d, Ear and Hearing<\/em>, 41<\/strong>(4), 811-824 (2020). [link]<\/a><\/p>

2019<\/h3>

Monroy G.L., Won J.,<\/strong> Dsouza R.I., Pande P., Hill M.C., Porter R.G., Novak M.A., Spillman D.R., and Boppart S.A. \u201cAutomated classification platform for the identification of otitis media using optical coherence tomography\u201d, npj Digital Medicine<\/em>, 2<\/strong>(22), 1-11 (2019). [link]<\/a><\/p>

2018<\/h3>

Dsouza R.I., Won J.,<\/strong> Monroy G.L., Spillman D.R., and Boppart S.A. \u201cEconomical and compact briefcase spectral domain optical coherence tomography system for primary care and point-of-care applications\u201d, Journal of Biomedical Optics<\/em>, 23<\/strong>(9), 096003 (2018). [link]<\/a><\/p>

Dsouza R.I., Won J.,<\/strong> Monroy G.L., Hill M.C., Porter R.G., Novak M.A., and Boppart S.A. \u201cIn vivo<\/em> detection of nanometer-scale structural changes of the human tympanic membrane using nano-sensitive optical coherence tomography\u201d, Scientific Reports<\/em>, 8<\/strong>, 8777 (2018). [link]<\/a><\/p>

Won J.,<\/strong> Monroy G.L., Huang P-C., Dsouza R.I., Hill M.C., Novak M.A., Porter R.G., Chaney E., Barkalifa R., and Boppart S.A. \u201cPneumatic low-coherence interferometry otoscope to quantify tympanic membrane mobility and middle ear pressure\u201d, Biomedical Optics Express<\/em>, 9<\/strong>(2), 397-409 (2018). Editor\u2019s Pick. <\/strong>[link]<\/a><\/p>

2017<\/h3>

Monroy G.L., Won J.,<\/strong> Spillman D.R., Dsouza R.I., and Boppart S.A. \u201cClinical translation of handheld optical coherence tomography: Practical considerations and recent advancements\u201d, Journal of Biomedical Optics<\/em>, 22<\/strong>(12), 121715 (2017). [link]<\/a><\/p>

2016<\/h3>

Tankam P.*, Won J.*,<\/strong> Canavesi C., Cox I. and Rolland J.P. \u201cAssessing the edge-thickness of soft contact lenses using Gabor-domain optical coherence microscopy\u201d, Optometry and Vision Science<\/em>, 93<\/strong>(8), 987-996 (2016). [link]<\/a><\/p>

2015<\/h3>

Duma V.F., Tankam P., Huang J., Won J.<\/strong> and Rolland J.P. \u201cOptimization of galvanometer scanning for optical coherence tomography\u201d, Applied Optics<\/em>, 54<\/strong>(17), 5495-5507 (2015). [link]<\/a><\/p>

Tankam P., He Z., Chu Y.J., Won J.,<\/strong> Canavesi C., Lepine T., Hindman H., Topham D., Gain P., Thuret G. and Rolland J.P. \u201cAssessing microstructures of the cornea with Gabor-domain optical coherence microscopy: pathway for corneal physiology and diseases\u201d, Optics Letters<\/em>, 40<\/strong>(6), 1113-1116 (2015). [link]<\/a><\/p>

2014<\/h3>

Tankam P., Santhanam A.P., Lee K.S., Won J.,<\/strong> Canavesi C. and Rolland J.P. \u201cParallelized multi-graphics processing unit framework for high-speed Gabor-domain optical coherence microscopy\u201d, Journal of Biomedical Optics<\/em>, 19<\/strong>(7), 071410 (2014). [link]<\/a><\/p>

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Publication (Google Scholar Link) 2025 Won J.*, Yaghy A.*, Ploner S., Kaiser S., Hwang Y., Maier A., Waheed N.K., and Fujimoto J.G., \u201cHigh-resolution, motion corrected, volume fused optical coherence tomography … Continue reading Publication<\/span> →<\/span><\/a><\/p>\n","protected":false},"author":587,"featured_media":0,"parent":0,"menu_order":4,"comment_status":"closed","ping_status":"closed","template":"elementor_header_footer","meta":{"footnotes":""},"class_list":["post-1307","page","type-page","status-publish","hentry"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/ubwp.buffalo.edu\/biophotonics\/wp-json\/wp\/v2\/pages\/1307","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ubwp.buffalo.edu\/biophotonics\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/ubwp.buffalo.edu\/biophotonics\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/ubwp.buffalo.edu\/biophotonics\/wp-json\/wp\/v2\/users\/587"}],"replies":[{"embeddable":true,"href":"https:\/\/ubwp.buffalo.edu\/biophotonics\/wp-json\/wp\/v2\/comments?post=1307"}],"version-history":[{"count":24,"href":"https:\/\/ubwp.buffalo.edu\/biophotonics\/wp-json\/wp\/v2\/pages\/1307\/revisions"}],"predecessor-version":[{"id":1679,"href":"https:\/\/ubwp.buffalo.edu\/biophotonics\/wp-json\/wp\/v2\/pages\/1307\/revisions\/1679"}],"wp:attachment":[{"href":"https:\/\/ubwp.buffalo.edu\/biophotonics\/wp-json\/wp\/v2\/media?parent=1307"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}